MIFit+ Documentation

Citation

Every publication has their own citation format, but here is the relevant information in bibtex format.
@misc{mifit7,
  author =    "Russ Athay and Bradley Smith and Jon Christopher and John Badger",
  title =     "MIFit+ Sofware for Protein Crystallography",
  year =      2008,
  publisher = "Rigaku Americas Corporation",
  address =   "San Diego, CA, USA",
  url =       "http://www.rigaku.com/software/mifit.html"
}

MIFit+ Release Notes

MIFit+ 7.1 Release Notes

Released June 12, 2008.

Changes

  • Added ability to control parameters of secondary structure rendering
  • Changes to OpenGL initialization (only affects some graphics configurations)
  • Fixed alignment of insertion code field in PDB export
  • Fixed crash when mouseover Solid Surface item in models context menu (only on Linux)
  • Fixed dictionary editor loosing planes when an atom was deleted
  • Fixed exported bond orders in dictionary editor
  • Fixed exporting to cif file in dictionary editor
  • Fixed loading of config.db when MIFit installed on some NFS mounts
  • Fixed periodic boundary mis-calculation in sphere contouring method
  • Fixed problem removing hydrogens from a ligand in dictionary editor
  • Fixed setting of dictionary editor entry name when imported from mol file

MIFit+ 7 Release Notes

Released April 25, 2008.

Changes

  • Split models/residues/atoms navigation tree now available for academic and commercial users
  • Automated notification when upgrades are available (disabled by default for consortium users)
  • Error annotations from MIExpert are automatically read from PDB file
  • Ability to create/control solid surfaces from tree
  • Fixed error displaying active site plot
  • Fixed error deleting hydrogens in dictionary editor
  • Misc. fixes and performance enhancements

MIFit+ 6.1 Release Notes

Released March 21, 2008.

Changes

  • Fixed problem loading ligand PDB file into dictionary (4687)
  • Fixed map grid size not being honored from mlw file (4688)
  • Fixed problem fitting both models when two models are loaded (4689)
  • Fixed flicker when rotate molecule on Windows only
  • Recognize MTZ column labels for precomputed structure factors from Buster
  • Fixed problem loading info from CRYST1 record in PDB (only affected maps from phs files)
  • Fixed bond-order values from mol files not being maintained (4050)
  • Fixed editing of cell/spacegroup on maps
  • Fixed refinement with alternate location atoms
  • Added surface transparency and coloring by distance to a residue or ligand
  • Improved detection and selection of OpenGL graphics modes
  • Modified interface to OpenEye ligand fitting for a bug in flynn
  • Multiple residue renumbering in one action
  • Fixed crash in Rama Plot (which was "demonstrated" at ASC meeting)
  • Optionally turn off navigation window
  • Sequence and navigation window display settings automatically saved in preferences
  • Error list from refinement and cocrystal solution jobs saved in PDB file
  • Automatically load error list from PDB file
  • More random testing (which found a few rarely-occuring crashes)
  • Fixed miscellaneous performance and memory issues

MIFit+ 6 Release Notes

Released February 12, 2008.

Changes

  • Quicker and easier model and map loading
    • Load multiple models and maps in one action (by menu or command-line)
    • Create regular and difference maps in one step
    • Recognizes standard MTZ files output by REFMAC
    • Automatic MTZ column selection by map type
    • Maps differentiated in models tree
    • Customizable contour settings
  • Stability and performance improvements
    • Stress testing using automatic randomized operations
    • Functional testing using scripted operation sequences
  • Reorganized menus for better usability
  • New application icon

MIFit+ 5 Release Notes

Released October 5, 2007.

Changes

  • Interactive Ramachandran plot (Consortium only)
  • Custom job control for running external crystallographic applications (Consortium only)
  • Chain segmentation preferences
  • Stability of navigation tree
  • Molecular Replacement - space group selection for CCP4/PHASER runs and sequence insertion code handling in CCP4/MOLREP runs

MIFit+ 4 Release Notes

Released September 14, 2007.

Changes

  • Solid surface rendering
  • Interface to automated image data processing
  • Automation applications packaged as MIExpert and available from command-line
  • Visual cue for model Show/Hide status
  • Diming of non-active models under user control
  • Improved cut-and-paste between models
  • Updated File/Preferences menu
  • Job/Report/Write Ligand Density Maps allows user-controlled border around ligand maps
  • Job/Molecular Replacement allows input of intensity data in various formats
  • Stability and efficiency of navigation tree
  • Ligand dictionary editor rendering decoupled from main canvas
  • Reliability and stability of session file handling