MIFit+ Documentation
Citation
Every publication has their own citation format, but here is the relevant information in bibtex format.
@misc{mifit7,
author = "Russ Athay and Bradley Smith and Jon Christopher and John Badger",
title = "MIFit+ Sofware for Protein Crystallography",
year = 2008,
publisher = "Rigaku Americas Corporation",
address = "San Diego, CA, USA",
url = "http://www.rigaku.com/software/mifit.html"
}
MIFit+ Release Notes
MIFit+ 7.1 Release Notes
Released June 12, 2008.
Changes
- Added ability to control parameters of secondary structure rendering
- Changes to OpenGL initialization (only affects some graphics configurations)
- Fixed alignment of insertion code field in PDB export
- Fixed crash when mouseover Solid Surface item in models context menu (only on Linux)
- Fixed dictionary editor loosing planes when an atom was deleted
- Fixed exported bond orders in dictionary editor
- Fixed exporting to cif file in dictionary editor
- Fixed loading of config.db when MIFit installed on some NFS mounts
- Fixed periodic boundary mis-calculation in sphere contouring method
- Fixed problem removing hydrogens from a ligand in dictionary editor
- Fixed setting of dictionary editor entry name when imported from mol file
MIFit+ 7 Release Notes
Released April 25, 2008.
Changes
- Split models/residues/atoms navigation tree now available for academic and commercial users
- Automated notification when upgrades are available (disabled by default for consortium users)
- Error annotations from MIExpert are automatically read from PDB file
- Ability to create/control solid surfaces from tree
- Fixed error displaying active site plot
- Fixed error deleting hydrogens in dictionary editor
- Misc. fixes and performance enhancements
MIFit+ 6.1 Release Notes
Released March 21, 2008.
Changes
- Fixed problem loading ligand PDB file into dictionary (4687)
- Fixed map grid size not being honored from mlw file (4688)
- Fixed problem fitting both models when two models are loaded (4689)
- Fixed flicker when rotate molecule on Windows only
- Recognize MTZ column labels for precomputed structure factors from Buster
- Fixed problem loading info from CRYST1 record in PDB (only affected maps from phs files)
- Fixed bond-order values from mol files not being maintained (4050)
- Fixed editing of cell/spacegroup on maps
- Fixed refinement with alternate location atoms
- Added surface transparency and coloring by distance to a residue or ligand
- Improved detection and selection of OpenGL graphics modes
- Modified interface to OpenEye ligand fitting for a bug in flynn
- Multiple residue renumbering in one action
- Fixed crash in Rama Plot (which was "demonstrated" at ASC meeting)
- Optionally turn off navigation window
- Sequence and navigation window display settings automatically saved in preferences
- Error list from refinement and cocrystal solution jobs saved in PDB file
- Automatically load error list from PDB file
- More random testing (which found a few rarely-occuring crashes)
- Fixed miscellaneous performance and memory issues
MIFit+ 6 Release Notes
Released February 12, 2008.
Changes
- Quicker and easier model and map loading
- Load multiple models and maps in one action (by menu or command-line)
- Create regular and difference maps in one step
- Recognizes standard MTZ files output by REFMAC
- Automatic MTZ column selection by map type
- Maps differentiated in models tree
- Customizable contour settings
- Stability and performance improvements
- Stress testing using automatic randomized operations
- Functional testing using scripted operation sequences
- Reorganized menus for better usability
- New application icon
MIFit+ 5 Release Notes
Released October 5, 2007.
Changes
- Interactive Ramachandran plot (Consortium only)
- Custom job control for running external crystallographic applications (Consortium only)
- Chain segmentation preferences
- Stability of navigation tree
- Molecular Replacement - space group selection for CCP4/PHASER runs and sequence insertion code handling in CCP4/MOLREP runs
MIFit+ 4 Release Notes
Released September 14, 2007.
Changes
- Solid surface rendering
- Interface to automated image data processing
- Automation applications packaged as MIExpert and available from command-line
- Visual cue for model Show/Hide status
- Diming of non-active models under user control
- Improved cut-and-paste between models
- Updated File/Preferences menu
- Job/Report/Write Ligand Density Maps allows user-controlled border around ligand maps
- Job/Molecular Replacement allows input of intensity data in various formats
- Stability and efficiency of navigation tree
- Ligand dictionary editor rendering decoupled from main canvas
- Reliability and stability of session file handling